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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015864316.1_cds_XP_016515954.1_28246
CDS Infomation

[gene=LOC107832607] [db_xref=GeneID:107832607] [protein=ERAD-associated E3 ubiquitin-protein ligase HRD1A-like] [protein_id=XP_016515954.1] [location=join(171414..171946,172664..172840,172996..173145,173233..173423,175246..175406)] [gbkey=CDS]
Sequence

ATGATGAGACTACAAACTTATGCGGGGCTTAGTGTAATGGCTACACTAGCTGTCATTTAT
CATCCCTTTAGCAGTAGAGGCCAGTTTTACCCAGCAATGGTTTATTTATCGACATCTAAG
ATCAGTCTGGTGCTTCTCCTCAACATGGGTCTGGCCATTATGTGCATTTTATGGCAGCTA
ACCAAGAAAGTTTTCCTTGGTACTCTTCGGGAGGCAGAGGTGGAGAGGCTAAATGAACAA
TCATGGCGGGAACTCATGGAAATACTTTTTGCAATTACTATTTTCCGCCAAGACTTCTCT
GTGATTTTTCTTGCCATGGTTACCGGACTATTGTTTATCAAGTCTTTGCATTGGTTGGCT
CAGAAACGGGTTGAGTATATTGAAACAACTCCAGCGGTTACTAAGTTGTCCCACATTCGA
ATAGTCTCTTTCATGGGCTTCCTCCTCCTCATTGATAGTATCTTTTTGTACAACTACATG
AACCATTTGATACAGACAAGACAGGCTTCTGTTTCTCTCTTCTTTGCATTTGAGTACATG
ATACTCACTACAACAACTGTTGCAACATTTGTGAAATATACATTCCATGTATGTGACATG
CTTATGGAAGGACAATGGGAGAGGAAGGCCGTATATACTTTCTACTTGGAGCTTATTCGG
GACTTGCTCCACTTGACCATGTACATGTGCTTCTTCCTCATGATTTTCATCAATTATGGT
GTGCCTCTGCACTTGATTCGGGAACTTTATGAGACATTCCGCAACTTCAAGAGTCGAGTT
GCTGATTACATACGCTATCGAAAAATCACTTCAAATATGAATGATCGTTTTCCAGATGCT
ACACCGGAAGAGCTCAATGGAGGTGATACCATCTGTATCATTTGTCGTGAGGAGATGACC
ACTGCCAAGAAACTTGTTTGTGGACATCTCTTTCATGTTAATTGCCTCCGGTCATGGCTA
GAACGTCAGCACACATGTCCTACATGCAGAGCCCTTGTTGTACCACCTGAAAATGGGACT
GATGTTGCAGGATCTCGATATGCTCAGCAAGGCCCAGGAACAAGTTTTACATCTCAAGGT
TCGCAAGCAGATCCCAGGACAAACAGCCATGTTAGCCAGCACCAGGCTAGACTCCAAGCT
GCAGCTGCTGCTGCTGCAATTTATGAGAAGTCCATTGTTTATCCTTCTGCACAGATGCTA
CCCTGGTATTAA

Peptide Sequence

PEP ID

XP_016515954.1
PEP Infomation

PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1A-like [Nicotiana tabacum]
Sequence

MMRLQTYAGLSVMATLAVIYHPFSSRGQFYPAMVYLSTSKISLVLLLNMGLAIMCILWQL
TKKVFLGTLREAEVERLNEQSWRELMEILFAITIFRQDFSVIFLAMVTGLLFIKSLHWLA
QKRVEYIETTPAVTKLSHIRIVSFMGFLLLIDSIFLYNYMNHLIQTRQASVSLFFAFEYM
ILTTTTVATFVKYTFHVCDMLMEGQWERKAVYTFYLELIRDLLHLTMYMCFFLMIFINYG
VPLHLIRELYETFRNFKSRVADYIRYRKITSNMNDRFPDATPEELNGGDTICIICREEMT
TAKKLVCGHLFHVNCLRSWLERQHTCPTCRALVVPPENGTDVAGSRYAQQGPGTSFTSQG
SQADPRTNSHVSQHQARLQAAAAAAAIYEKSIVYPSAQMLPWY

Transcript Sequence

Gene sequence data has not been registered.